Change ks_similarity default arg

Helen Abbott (Advanced Research Computing)requested to merge
ks_true into master

Context

Received email from Postdoc:

"I noticed that in the ks_similarity function in the similarity module we have:

def ks_similarity(hists: tuple[np.ndarray, np.ndarray], norm: bool = False, alpha: float = 0.05, remove_zero: bool = False):

The remove_zero is set to False as a default, however, in all the analysis and within the website itself, it is set to True. Would it be possible to change the default to True? So if people want to use the python package rather than the website, they will get results that match up? "

Changes

I have changed the default to True and updated the tests to reflect this.

Edited by Helen Abbott (Advanced Research Computing)

Merge request reports